PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000233192
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TALE
Protein Properties Length: 353aa    MW: 39937.6 Da    PI: 6.9483
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000233192genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox17.57.2e-062873142855
                    HHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
       Homeobox  28 eereeLAkklgLterqVkvWFqNrRake 55 
                    +++  LA+++gL+ +q+ +WF N+R ++
  MDP0000233192 287 AQKLALAESTGLDLKQINNWFINQRKRH 314
                    56778********************885 PP

2ELK383.6e-13210231122
            ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                    ELK qLlrKYsgy g+LkqEF+
  MDP0000233192 210 ELKVQLLRKYSGYMGTLKQEFM 231
                    9********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.7E-1864108IPR005540KNOX1
PfamPF037902.6E-2066105IPR005540KNOX1
SMARTSM012561.9E-24117168IPR005541KNOX2
PfamPF037919.0E-20122167IPR005541KNOX2
SMARTSM011884.9E-7210231IPR005539ELK domain
PROSITE profilePS5121310.79210230IPR005539ELK domain
PfamPF037896.2E-10210231IPR005539ELK domain
SMARTSM003894.7E-4232321IPR001356Homeobox domain
SuperFamilySSF466891.04E-10232326IPR009057Homeodomain-like
CDDcd000867.13E-8233317No hitNo description
Gene3DG3DSA:1.10.10.603.4E-24235319IPR009057Homeodomain-like
PfamPF059204.0E-10250313IPR008422Homeobox KN domain
PROSITE profilePS500719.28288317IPR001356Homeobox domain
PROSITE patternPS000270292315IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEGGISRNSG NLGFLDSSLA AALMNSETRT TSSSSYSKXF LSLPLINNIP NLQSHPHEXI  60
DQEMSVKAKI MAHPLYPQLL SAYVNCLKVG APAEVXARLE QVCSANNSEA AKRSSIRGGD  120
NHPDAALDQF MEAYCEMLTK YEEELTEPFK EAMLFLSNID TQLKALTLHS NSSSDSAIVS  180
SSDFVGQSGS PKEAXAIKEC SMDPQAEDRE LKVQLLRKYS GYMGTLKQEF MKKKKNGKLP  240
EEARHQLLDW WCRHYKWPYP SVQISYSSTS LQCKLRKDAT IHHAIEAQKL ALAESTGLDL  300
KQINNWFINQ RKRHWKPXED MQFVLMDPTL HHHHHPHXYM DNAICNPFSM DCX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.15611e-109cell culture
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008342121.10.0PREDICTED: homeobox protein knotted-1-like LET6 isoform X1
SwissprotP466081e-103HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLD3IWE81e-120D3IWE8_PRUPE; Class I KNOX homeobox transcription factor STM-like 1
STRINGVIT_12s0059g01190.t011e-108(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20393480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.16e-92KNOX/ELK homeobox transcription factor